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GuPPy GuPPy

GuPPy

  • Installation
  • Tutorials
  • How-to Guides
  • Explanation
  • Reference
  • Contributing
  • Cite
  • GitHub
  • PyPI
  • Issue tracker
  • Installation
  • Tutorials
  • How-to Guides
  • Explanation
  • Reference
  • Contributing
  • Cite
  • GitHub
  • PyPI
  • Issue tracker

Section Navigation

  • Fiber photometry
  • Z-score normalization
  • Transient detection
  • Cross-correlation
  • PSTH (peri-stimulus time histogram)
  • PSTH significance
  • Artifacts in fiber photometry
  • Isosbestic correction
  • Fiber photometry data in NWB
  • Explanation

Explanation#

Explanation pages give background and context: the science behind fiber photometry, the design decisions in the GuPPy pipeline, and the reasoning behind key parameter choices.

  • Fiber photometry
  • Z-score normalization
  • Transient detection
  • Cross-correlation
  • PSTH (peri-stimulus time histogram)
  • PSTH significance
  • Artifacts in fiber photometry
  • Isosbestic correction
  • Fiber photometry data in NWB

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Fiber photometry

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